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    Jiwaji University Ph.D Course Work Biochemistry 2020-21



    Ph.D., Course Work

    Paper I : Research Methodology IFor Life Sciencesl

    Total Credits : 4


    1, lntroduction to Research Design

    Nature and objectives of research, Methods of research: Historical, descriptive and

    experimental, research process, research approaches, criteria for good research, meaning of

    resaerch design, features of good design, differentresearch designs and basic principles of

    experimental designs, design of experiments.

    2. Data Collection and Analysis

    Types of data, methods and techniques of data collection, primary and secondary data, meta

    analysis, historical methods, content analysis, devices usedin data collection, pilot study and

    pretests of tools, choice of data collection methods.

    Data Processing and Analysis

    Measures of Central Tendency, Measures of Dispersion, Measures of Variation, Measures of

    Central Tendency vs Meaures of Dispersion, Normal Distribution, Measures of Skewness and

    lnterpretation, Correlation and Regression: Types and Applications.

    Test of Signification

    Significance of difference in means, Standard Deviation and Standard Error; Z-test, 't' test, and

    chi square test: Purpose and use, Analysis ofVariance.

    Paper writing and report generation

    Basic concept of paper/ thesis writing and report generation, writing Research Abstract,

    lntroduction, Review of Literature, Results, Conclusion, Concepts of Bibliography and

    References, Significance of Report writing, Types of Research Reports, Methods of presentation

    of Reports, Formats for Publication in Research Journals.

    Reference Books*

    1. Research Methodology: Methods and Techniques- C.R.Kothari, Nre Age publishers.

    2. Research Methodology- R.N.Trivediand D.P.5hukla, College Book Depot, jaipur

    3. Research Methodology- D. Chakraborty, Lotus Press

    4. Research Methodology for Life Sciences- N.Arumugam, Saras publications

    5. Random Data Analysis and Measurement ProceduresBendat and Pcrsol, Wiley lnterscience

    Methods in Biostatistics- B.K.Mahajan, J.p. Brothers Medicar publishers' N Delhi' lndia

    -J W'Creswell' SAGE Publications' INC'

    Principles of Biostatistics-*Latest Edition of the Books


    Ph.D. Course Work

    Paper ll : Computer Applications and Bioinformatics IFor life Sciences]

    Ph.D, Course Work-Biochemistry-: Session 2020"21-page No. 4


    3. Computer Fundamentals

    Computer Basics and Terminology, lnput and Output Devices, Computer memory, Computer

    generatioon and crassification, Types of software, operating System, Their Types, Basic Terms related to Windows OS, Computer Netwroks, LAN, l\lAN. WAN

    Reserach Porishing Toors: MS word, creatin,, editinS and saving a word document, use of

    Autotext, Tables related Operations, Graphics.

    lntroduction to Spreadsheet and presentation

    lntroduction to Excel, Use of Spreadsheet in Research, Dta Storing, Various Data Types, Use of

    Formula and Functions, Calculation, Manipulation and Analysis of Data, preparing Cha,.s, MS Power Point, Features and Functions, Creating presentations, Animation, Customizing

    Presentation.

    lntroduction to lnternet and presentation

    lntroduction to lnternet, WWW, Searching on lnternet, Literature survey, Websites, Search

    Engines, Anti-Plagarism Software, Viruses and its Types, protection from Viruses

    lntroduction of computers in Research: Literature search using various search Engines, writing

    References, Software for Reference Arrangement, Statistical packaBes: Sigma plot etc.

    Bioinformatics

    Applications of Bioinformatics in Life sciences, Biorogicar Database: primary, secondary and

    composite Database, sequence Database: Nucreic acid (EMBL and GenBank), protein Database

    (PlR and SWISS-pORT), Structure Database: protein Data Bank.

    sequence Analysis: Biorogicar Motivation of sequence Anarysis, omorogy, Base pair Arignment:

    Local, Global and Toors for Base pair Alignment: BLAST and FASTA, Murtipre sequence Arignment

    Methods.

    Phylogenetic Analysis, protein Structure prediction, Drug Designing

    Phylogenetic Analysis: Methods, character based and distance based methodsTree evaruation,

    Protein Structure predictions: homology modeling, treading, ab_initio methods,

    Expression sequence Tags (EST) and its Applications, Microarray Database and its Applications


    Reference Books+

    L. An lntroduction to Computational Biochemistry- C. Stan and T.Sal

    2. lntroduction to Bioinormatics: A Theoretical and practical Approach- s.A.Krawetz

    D. D.Womble

    3. Bioinformatics: Genes, Proteins and Computer- C.A.Orengo, D.T. Jopnes, J.M. Thornton 4. lnstant Notes on Bioinformatics- D.R.Westhead, J.M.perish, R.M.Toyman

    5. Essential Bioinformatics- Jin Xiong

    6. An lntroduction to Bioinformatics Algorithms- N.C. Jones, p. pevzner

    7. Bioinformatics: Sequence and Genome Analysis- D.W.Mount

    8. Statistical Metods in Bioinformatics: An lntroduction- S.Misener, S.A.Krawetz

    9. Bioinformatics: Database and Algorithms- N.Gautham

    10. Bioinformatics Technology: yi-ping phoebeChen

    11. Data Mining: Multimedia, Softcomputing and Bioinformatics: S.Mitra, T. Acharya

    xLatest Edition of the Books


    Ph.D. Course Work

    Paper lll : Advances in Biochemistry

    Total: 3 Credits

    1. Advance Chromatography Techniques: Principle and Applications of LCMs, HPTLC, FpLC

    2. Advance Microscopy Techniques: Electron Microscopy, Confocal Microscopy

    3. Flow Cytometry: Basic Principle and Applications

    4. Quantitative DNA Amplification: Basic Principle and Applications of RealTime PCR

    5. Na nobiotechnoloy: Nanomaterials, types, methods of synthesis and cha ra cte rizatio n of

    nanoparticles, applications in diagnostics, therapy, agriculture etc.

    6. Biosensors: Principle, types and applications

    7. Probiotics: Probiotics in healthy food, functionalfood

    8. Latest Techniques in Molecular Biology: Next generation DNA sequencing, CRySpR

    9. Bioethics: Ethical, legaland social issues related to biological research

    10. Drug Discovery: Overview of Drug Discovery from natural products, drug development and

    pharmacokiteics, preclinical and clinical trials.

    11. System Toxicology: Realworls applications and opportunities

    12. Toxicogenomics: lntroduction, scope, applications and limitations

    13. Toxicokinetics/ Pharmacokinetics of drugs, toxins. Toxicants etc; Hazard evation and risk

    assessment, safety measures

    14. Bioreactors: Principle of bioprocesses, design and types of fermenters, Nutrient media and ' growth optimization, downstream processes, analysis of different types of fermented products

    15. Phytoactive compounds from plants: tupes and classification, their therapeutic signiflcance

    16. Animal models for life style disorders like diabetes melllitus, hepatic disorders rheumatoid

    arthritis etc. Role of toxicology, pha rmacokinetics and preclinical studies in reference to these

    disorders.

    17. Reproductive system: Basics, immunology of male and female reproductive systems

    18. Fetus as alloBraft: Paradox of pregnancy, im m unod iagnotics, immunology of reproduction

    19. lnfertility and foetal wastage, lntifertility vaccines


    Note: The course will include lectures, discussions and seminars, There is no assigned text for the

    course. The information will be taught from examples of recent advancesreported in the current

    scientific letrature and/ or drawn frm various textbook/ internet sources.